Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs142044092 chr5:34838716 CTAAA/C 0.000201 114 39.75 42.9 28.43 KM Plot
THYM rs142127423 chr1:22105516 C/T 1.81E-13 117 42.25 42.88 6 KM Plot
THYM rs1422212 chr19:29330191 T/A 1.16E-10 117 43.27 42.25 12.63 KM Plot
THYM rs142226578 chr11:125585000 G/A 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs142396913 chr2:30761590 CA/C 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs142544525 chr10:1540027 A/AG 0.000185 117 38.33 42.9 25.83 KM Plot
THYM rs142584982 chr4:70056142 T/A 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs142648378 chr2:30827198 CAGCTGTCT/C 1.67E-8 117 40.67 44.75 33.13 KM Plot
THYM rs142725493 chr7:29725380 G/A 3.51E-13 119 38.13 46.27 6 KM Plot
THYM rs142862805 chr20:29522107 G/A 2.67E-13 118 38.13 50.53 6 KM Plot
THYM rs142934701 chr18:33607447 C/CTA 0.000136 119 49.4 35 51.23 KM Plot
THYM rs142945956 chr4:70051454 G/A 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs143163474 chr4:70061764 C/CT 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs143164573 chr9:97112496 G/C 9.18E-5 117 41.22 42.73 17.03 KM Plot
THYM rs143273666 chr4:70205579 C/T 1.01E-12 116 41.77 42.3 6 KM Plot